iu_generate_upload_creds.py

Generates upload credentials for one or more File records on the IGVF Portal. The upload credentials store AWS authorization tokens to allow a user to upload a file to a presigned S3 URL.

The Exception requests.exceptions.HTTPError will be raised if the response from the server a not a successful status code for any File object when attempting to generate the upload credentials, and will utlimately halt the program with an error message.

usage: iu_generate_upload_creds.py [-h] [-m IGVF_MODE]
                                   (-f FILE_IDS [FILE_IDS ...] | -i INFILE)

Named Arguments

-m, --igvf-mode

The IGVF Portal site (‘prod’, ‘sandbox’, ‘staging, or an explicit host name, i.e. ‘*.demo.igvf.org’) to connect to.

-f, --file-ids

One or more IGVF File identifiers. They can be any valid IGVF File object identifier, i.e. alias, uuid, accession, md5sum.

Default: []

-i, --infile

Input file containing File object identifiers, one

per line.